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  1. Abstract

    Estimates suggest that over 4 gigatons per year of carbon dioxide (Gt-CO2year−1) be removed from the atmosphere by 2050 to meet international climate goals. One strategy for carbon dioxide removal is seaweed farming; however its global potential remains highly uncertain. Here, we apply a dynamic seaweed growth model that includes growth-limiting mechanisms, such as nitrate supply, to estimate the global potential yield of four types of seaweed. We estimate that harvesting 1 Gt year−1of seaweed carbon would require farming over 1 million km2of the most productive exclusive economic zones, located in the equatorial Pacific; the cultivation area would need to be tripled to attain an additional 1 Gt year−1of harvested carbon, indicating dramatic reductions in carbon harvest efficiency beyond the most productive waters. Improving the accuracy of annual harvest yield estimates requires better understanding of biophysical constraints such as seaweed loss rates (e.g., infestation, disease, grazing, wave erosion).

     
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  2. Land use and land cover (LULC) can significantly alter river water, which can in turn have important impacts on downstream coastal ecosystems by delivering nutrients that promote marine eutrophication and hypoxia. Well-documented in temperate systems, less is known about the way land cover relates to water quality in low-lying coastal zones in the tropics. Here we evaluate the catchment LULC and the physical and chemical characteristics of six rivers that contribute flow into a seasonally hypoxic tropical bay in Bocas del Toro, Panama. From July 2019 to March 2020, we routinely surveyed eight physical and chemical characteristics (temperature, specific conductivity, salinity, pH, dissolved oxygen (DO), nitrate and nitrite, ammonium, and phosphate). Our goals were to determine how these physical and chemical characteristics of the rivers reflect the LULC, to compare the water quality of the focal rivers to rivers across Panama, and to discuss the potential impacts of river discharge in the Bay. Overall, we found that the six focal rivers have significantly different river water characteristics that can be linked to catchment LULC and that water quality of rivers 10 s of kilometers apart could differ drastically. Two focal catchments dominated by pristine peat swamp vegetation in San San Pond Sak, showed characteristics typical of blackwater rivers, with low pH, dissolved oxygen, and nutrients. The remaining four catchments were largely mountainous with >50% forest cover. In these rivers, variation in nutrient concentrations were associated with percent urbanization. Comparisons across Panamanian rivers covered in a national survey to our focal rivers shows that saltwater intrusions and low DO of coastal swamp rivers may result in their classification by a standardized water quality index as having slightly contaminated water quality, despite this being their natural state. Examination of deforestation over the last 20 years, show that changes were <10% in the focal catchments, were larger in the small mountainous catchments and suggest that in the past 20 years the physical and chemical characteristics of river water that contributes to Almirante Bay may have shifted slightly in response to these moderate land use changes. (See supplementary information for Spanish-language abstract). 
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  3. Oceanic internal gravity waves propagate along density stratification within the water column and are ubiquitous. They can propagate thousands of kilometers before breaking in shoaling bathymetry and the ensuing turbulent mixing affects coastal processes and climate feedbacks. Despite their importance, internal waves are intrinsically difficult to detect as they result in only minor amplitude deflection of the sea surface; the need for global detection and long time series of internal waves motivates a search for geophysical detection methods. The pressure coupling of a propagating internal wave with the sloping seafloor provides a potential mechanism to generate seismically observable signals. We use data from the South China Sea where exceptional oceanographic and satellite time series are available for comparison to identify internal wave signals in an onshore passive seismic data set for the first time. We analyze potential seismic signals on broadband seismometers in the context of corroborating oceanographic and satellite data available near Dongsha Atoll in May–June 2019 and find a promising correlation between transient seismic tilt signals and internal wave arrivals and collisions in oceanic and satellite data. It appears that we have successfully detected oceanic internal waves using a subaerial seismometer. This initial detection suggests that the onshore seismic detection and amplitude determination of oceanic internal waves is possible and can potentially be used to expand the historical record by capitalizing on existing island and coastal seismic stations. 
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  4. Abstract

    Large-amplitude internal solitary wave (ISW) shoaling, breaking, and run-up was tracked continuously by a dense and rapidly sampling array spanning depths from 500 m to shore near Dongsha Atoll in the South China Sea. Incident ISW amplitudes ranged between 78 and 146 m with propagation speeds between 1.40 and 2.38 m s−1. The ratio between wave amplitude and a critical amplitudeA0controlled breaking type and was related to wave speedcpand depth. Fissioning ISWs generated larger trailing elevation waves when the thermocline was deep and evolved into onshore propagating bores in depths near 100 m. Collapsing ISWs contained significant mixing and little upslope bore propagation. Bores contained significant onshore near-bottom kinetic and potential energy flux and significant offshore rundown and relaxation phases before and after the bore front passage, respectively. Bores on the shallow forereef drove bottom temperature variation in excess of 10°C and near-bottom cross-shore currents in excess of 0.4 m s−1. Bores decelerated upslope, consistent with upslope two-layer gravity current theory, though run-up extentXrwas offshore of the predicted gravity current location. Background stratification affected the bore run-up, withXrfarther offshore when the Korteweg–de Vries nonlinearity coefficientαwas negative. Fronts associated with the shoaling local internal tide, but equal in magnitude to the soliton-generated bores, were observed onshore of 20-m depth.

     
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  5. The interaction of coral reefs, both chemically and physically, with the surrounding seawater is governed, at the smallest scales, by turbulence. Here, we review recent progress in understanding turbulence in the unique setting of coral reefs?how it influences flow and the exchange of mass and momentum both above and within the complex geometry of coral reef canopies. Flow above reefs diverges from canonical rough boundary layers due to their large and highly heterogeneous roughness and the influence of surface waves. Within coral canopies, turbulence is dominated by large coherent structures that transport momentum both into and away from the canopy, but it is also generated at smaller scales as flow is forced to move around branches or blades, creating wakes. Future work interpreting reef-related observations or numerical models should carefully consider the influence that spatial variation has on momentum and scalar flux. 
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  6. null (Ed.)
    Abstract Internal solitary waves are ubiquitous in coastal regions and marginal seas of the world’s oceans. As the waves shoal shoreward, they lose the energy obtained from ocean tides through globally significant turbulent mixing and dissipation and consequently pump nutrient-rich water to nourish coastal ecosystem. Here we present fine-scale, direct measurements of shoaling internal solitary waves in the South China Sea, which allow for an examination of the physical processes triggering the intensive turbulent mixing in their interior. These are convective breaking in the wave core and the collapse of Kelvin–Helmholtz billows in the wave rear and lower periphery of the core, often occurring simultaneously. The former takes place when the particle velocity exceeds the wave’s propagating velocity. The latter is caused by the instability induced by the strong velocity shear overcoming the stratification. The instabilities generate turbulence levels four orders of magnitude larger than that in the open ocean. 
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  7. Abstract

    We present a modeling study of an idealized island with sloping sides in a stratified ocean with internal tides propagating through the domain, which transform into nonlinear internal waves as they encounter shallow depths. In the base condition, representative of a mid‐latitude island with relatively steep super critical slopes, the nonlinear internal waves shoaling on the island wrap around the island, scatter, and create an asymmetric wavefield. Radiation stress gradients from this wavefield and rotation are balanced by pressure gradients and turbulent vertical diffusion in the momentum equations which drive residual mean currents around the island. We explore the effects of different physical parameters including no rotation, higher Froude number, subcritical slope, addition of barotropic tides, larger excursion number, and addition of large‐scale mean currents. All simulations showed formation of residual currents of varying intensity, upwelled deep waters in shallow regions, and cooler waters on the side of the island consistent with the direction of incoming internal tides. While the no rotation and strong mean flow conditions created some upwelling, of all the modeled conditions, the subcritical slope has the greatest potential for creating favorable conditions for benthic organisms through enhanced upwelling. Areas of the world's oceans with stratified waters sufficient to sustain internal tide motions, strong internal tide energy, and local subcritical bottom slopes are likely to have cooler waters and more upwelled deep waters than the surrounding areas, and potentially serve as thermal refugia from future ocean warming.

     
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  8. null (Ed.)
    Abstract Distributed temperature sensing (DTS) uses Raman scatter from laser light pulsed through an optical fiber to observe temperature along a cable. Temperature resolution across broad scales (seconds to many months, and centimeters to kilometers) make DTS an attractive oceanographic tool. Although DTS is an established technology, oceanographic DTS observations are rare since significant deployment, calibration, and operational challenges exist in dynamic oceanographic environments. Here, results from an experiment designed to address likely oceanographic DTS configuration, calibration, and data processing challenges provide guidance for oceanographic DTS applications. Temperature error due to suboptimal calibration under difficult deployment conditions is quantified for several common scenarios. Alternative calibration, analysis, and deployment techniques that help mitigate this error and facilitate successful DTS application in dynamic ocean conditions are discussed. 
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  9. Abstract

    Idealized numerical modeling of thermally driven baroclinic exchange is performed to understand how cross‐shore flow is modulated by steady alongshore currents and associated shear‐generated turbulence. In general, we find that shear‐driven vertical mixing reduces the temperature gradients responsible for establishing the baroclinic flow, such that cross‐shore thermal exchange diminishes with alongshore current speed. Circulation in a base‐case simulation of thermal exchange with no alongshore forcing contains a cooling response consisting of a midday flow in the form of a downslope current with a compensating onshore near‐surface flow driving cross‐shore exchange, followed by an afternoon warming response flow via an offshore‐directed surface warm front, with a compensating return flow at the bottom. Nighttime convective cooling enhances vertical mixing and decelerates the warming response, and the diurnal cycle is renewed. In this base‐case scenario, representative of tropical reef environments with optically clear water and weak alongshore flow, surface heating and cooling can drive cross‐shore circulation withO(1) cm s−1velocities. Alongshore flow forcing is implemented to induce upwelling‐ and downwelling‐favorable cross‐shore circulation. For mild alongshore forcing, the baroclinic cross‐shore exchange flow is enhanced due to an increase in the horizontal temperature gradient. Stronger alongshore flow leads to diminished thermally driven exchange, ultimately reaching a regime where the cross‐shore exchange is due predominantly to Ekman dynamics. Though exchange velocities are relatively small (O(1) cm s−1), these persistent exchange flows are capable of flushing the nearshore region multiple times per day, with important implications for water properties of nearshore ecosystems.

     
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